PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3024170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 376aa    MW: 42056.7 Da    PI: 8.4567
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3024170.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.93.2e-33591862115
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaes 77 
                       g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ akpai+el+ +                s          +++
  Lj1g3v3024170.1  59 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKPAIDELPPLpnfpqpgnftfsgypsS------LitPHHH 146
                      689*************************************************************87777777666533330......1333333 PP

              TCP  78 ssssasnsssg.............kaaksaakskksqksaasalnlakesr 115
                      + ++as+s+++             +           + s+++  n++++ +
  Lj1g3v3024170.1 147 EANTASQSNEQlqfheregtsvrgQ-----------KMSKEQLFNINRSGN 186
                      3333333333333322223333331...........222222233333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3161200IPR005333Transcription factor, TCP
PROSITE profilePS5136931.96461119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRDTQDDYKI PKEADNIPLK LEGHSSDDHE KPKPPSASTS PAQWSRLKDP RIVRVSRAFG  60
GKDRHSKVCT IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN VAKPAIDELP  120
PLPNFPQPGN FTFSGYPSSL ITPHHHEANT ASQSNEQLQF HEREGTSVRG QKMSKEQLFN  180
INRSGNVDQW EGSSQNSMWK LKAKEVSEEL VTDKENWMNK QGSNNNEGGS AHVLPNNLQR  240
ANHYPSFLGL LNNMPLGYAY NQWENSGGVN SQLGGNHGFS NQTNISVVPF PSTLALSTGN  300
SQISQSYIPS HVTAMDVDQR QINHYQMLSL SSQNLLVNNS LNPSFSLAMM TPRLLHSPNS  360
NENPSSSHRD QDFTSK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.87851e-165floral bud| pod
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552583.11e-129PREDICTED: transcription factor TCP13-like
TrEMBLA0A0B2PW281e-129A0A0B2PW28_GLYSO; Transcription factor TCP13
TrEMBLK7MUZ01e-129K7MUZ0_SOYBN; Uncharacterized protein
STRINGGLYMA18G50371.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-45plastid transcription factor 1